YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32408225, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRGLRLRFP RPRTFLGFMS LQTGTELIAL SLVFNRITGI YGILALFTGF PLSLLQISLY  60
   61 LLSVLVVGSL AYLIPHIRHQ SPFQNLALAF LYGIDTLLNF AYVTFFATTW YLTQFHDPQG 120
  121 PASKGDIPES ASPSNGEGNY EHDSAQKNQL EKAVGVHESA ASMCLVVGFT LIRIYFALVV 180
  181 CAYARAVVQR YVDMNSGWAG GPLGSGEVVD DDNGKEGHVA DPFVEGAPLG EGWQGKMGRM 240
  241 MVGFGRGYWL GGRKEDEEWA REIGGRLKGG RYSRV

Type	Start	End	Confidence
Cytoplasmic	1	14	0.94
Transmembrane Helix	15	34	0.90
Non-Cytoplasmic	35	53	0.67
Transmembrane Helix	54	74	0.92
Cytoplasmic	75	87	0.80
Transmembrane Helix	88	108	0.91
Non-Cytoplasmic	109	162	0.92
Transmembrane Helix	163	184	0.77
Cytoplasmic	185	275	0.90