YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|41398897, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSHQSAGKI DDGVVAHRAS GRTSFAESFA GADPQADAQR RVALRRMKAV ALSFLIGATG  60
   61 LFLACRWAQA QPGVGAWVGY VGAAAEAGMV GALADWFAVT ALFRHPLGIP IPHTAIIKRK 120
  121 KDQLGEGLGT FVRENFLSPE VVETKLRDAQ VSGRLGKWLS EAAHAERVAG ETATVLRVLV 180
  181 ELLRDEDVQQ VIDRMIVRRI AEPQWGPPVG RVLATLLAEN RQEALIQLLA DRAFQWSLNA 240
  241 GEVIQRVVER DQRVVERDSP TWSPRFIDHL VGDRIHRELM DFTDKVRRNP DHELRRSATR 300
  301 FLFEFADDLQ HDPDTIARAD AIKEQLMARD EIANAAATAW KTLKRLVLEG VDDPSSALRS 360
  361 RIADTVVRIG ESLRDDADLR DKVDNWLVRA AQHLVSQYGV EITAIITDTI ERWDAEEASR 420
  421 RIELHVGRDL QFIRINGTVV GSLAGLVIYA VAQLLF

Type	Start	End	Confidence
Cytoplasmic	1	48	0.99
Transmembrane Helix	49	70	0.93
Non-Cytoplasmic	71	76	0.90
Transmembrane Helix	77	99	0.85
Cytoplasmic	100	429	0.99
Transmembrane Helix	430	452	0.89
Non-Cytoplasmic	453	456	0.80