YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|118463227, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISKPRGRRA VNLQILPSAM TVLSVCAGLT SIRFALEHQP KAAMALIAAA AILDGLDGRV  60
   61 ARILDAQSRM GEEIDSLADA VNFGVTPAIV LYVTLLTTSP AGWVAILLYA VCVVLRLARF 120
  121 NALLDDGSQP AYTHEFFVGM PAPAGAVSMI GLIGLKLQFG DGWWTSPLFL CIWITGTSIL 180
  181 MVSKIPMRKM HAVAVPPSWA APLLAVLAIC AAAAVLAPYV LIWVIIVAYL CHVPFAVRNQ 240
  241 RWLAAHPEAW DEAPKQRRAA RRAIRRAQPN RRSVTRLGLR KPGRRVP

Type	Start	End	Confidence
Cytoplasmic	1	12	0.89
Transmembrane Helix	13	35	0.89
Non-Cytoplasmic	36	41	0.83
Transmembrane Helix	42	61	0.69
Cytoplasmic	62	76	0.66
Transmembrane Helix	77	96	0.74
Non-Cytoplasmic	97	100	0.64
Transmembrane Helix	101	120	0.87
Cytoplasmic	121	135	0.79
Transmembrane Helix	136	155	0.95
Non-Cytoplasmic	156	162	0.80
Transmembrane Helix	163	183	0.93
Cytoplasmic	184	194	0.75
Transmembrane Helix	195	215	0.83
Non-Cytoplasmic	216	218	0.48
Transmembrane Helix	219	237	0.78
Cytoplasmic	238	287	0.68