YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|41396998, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFQGFDALPE VLRPIAHQPH PQPAPEAPPA RATLVDCAVY DDGNRLPGVF GYADALDKVR  60
   61 EIESQGREGF VWVGLREPNQ TEMQEVADVF GLHALAVEDA VCAHQRPKVE RYDDTLFLVL 120
  121 KTVNYVPHES VVLAREIVET GEIMVFVGRD FVVTVRHGEH GGLSEVRKRM DGDPEQMRLG 180
  181 PFAVMHAIAD HVVDHYLEVS SLMLADIDSI EGLAFAPGSK IDVEPIYLLK REVVELRRCV 240
  241 NPLSSAFHRI QTENKDVISK EVRRYLRDVA DHHSEAADQI ASYDDMLNSL IQAALARVGM 300
  301 QQNNDMRKMA AWAGILAVPT MIAAIYGMNF HFMPELNWTW GYPAVMAGMA VVCLVLYFQF 360
  361 RNRNWL

Type	Start	End	Confidence
Cytoplasmic	1	308	0.96
Transmembrane Helix	309	330	0.91
Non-Cytoplasmic	331	338	0.81
Transmembrane Helix	339	360	0.93
Cytoplasmic	361	366	0.93