YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|41407996, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	94	0.99
Transmembrane Helix	95	118	0.90
Non-Cytoplasmic	119	132	0.83
Transmembrane Helix	133	152	0.91
Cytoplasmic	153	162	0.81
Transmembrane Helix	163	183	0.94
Non-Cytoplasmic	184	199	0.73
Transmembrane Helix	200	220	0.80
Cytoplasmic	221	230	0.81
Transmembrane Helix	231	248	0.94
Non-Cytoplasmic	249	272	0.51
Transmembrane Helix	273	296	0.86
Cytoplasmic	297	322	0.56
Transmembrane Helix	323	340	0.54
Non-Cytoplasmic	341	360	0.78
Transmembrane Helix	361	380	0.92
Cytoplasmic	381	393	0.83
Transmembrane Helix	394	417	0.83
Non-Cytoplasmic	418	424	0.68
Transmembrane Helix	425	446	0.87
Cytoplasmic	447	606	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNALTRLLG RGKDTTKTAE PADDDGAAAE TGAVPDCAPE AADEQDQQAT DEPTKTSQKA  60
   61 SQKASKKESK KAPKDKPTDG SSHSRFGAWL SRPMTSFHLI IAIAGLLTTL GLIMVLSASG 120
  121 VRSYDADGSA WVIFGKQVLW TVIGLIACYA SLRMSVRFIR RVAFTGYVVT VILLVLVLVP 180
  181 GIGNLANGSR KWFVVAGFSM QPSELAKIAF AIWGAHMLAA RRLDRASLRE LLIPLVPAAV 240
  241 IALALIVAQP DLGQTVSLGI ILLALLWYAG LPLRVFITSL LAVFMAGAVL AMSAGYRSDR 300
  301 VRSWMNPEND PQDTGYQARQ AKFALAHGGI FGDGLGQGVA KWNYLPNAHN DFIFAIIGEE 360
  361 LGFIGAFGLL VLFGLFAYTG MRIARRSADP FLRLLTATTT MWVLGQAFIN IGYVIGILPV 420
  421 TGIQLPLISA GGTSTAATLF MIGIMANAAR HEPEAVAALR AGRDDKVNRL LRLPLPEPYS 480
  481 PTRLEAFRDR KRTGPQPAPK SAPKSRPAPR KGAKPAGRKP TRNAGRNATR NAGFHADAPL 540
  541 PPPLPRTAGR AGRQSGGNTR ARARHHGSGQ RYASLGANSG ANQAASSRAG QRQPRRARAL 600
  601 EGQRYG