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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|41396248, gi|...
Protein type: Transmembrane
Type Confidence: 0.92
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDQLQHATE ALRKALVQVE RLKRTNRALL ERSSEPIAIV GMSCRFPGGV DSPEALWQMV  60
   61 AEGRDVISEF PTDRGWDLAA LYDPDPDARH KCYVNTGGFV DNVADFDPAF FGIAPSEALA 120
  121 MDPQQRMFLE LSWEALERAG IDPVKLRGSA TGVFAGLIVQ GYGMLAEEIE GYRLTGMTSS 180
  181 VASGRVSYVL GLEGPAVSVD TACSSSLVAL HMAVQSLRSG ECDLALAGGA TVNATPTVFV 240
  241 EFSRHRGLAP DGRCKAYAGA ADGVGWSEGG AMLVVERLSD ARRLGHSVLA VVRGSAVNQD 300
  301 GASNGLTAPN GPSQQRVVRA ALANAGLSAA EVDVVEGHGT GTTLGDPIEA QALLATYGQD 360
  361 RGQPLWLGSI KSNMGHTQAA AGVAGVIKMV LAMRHELLPA TLHVDEPSPH VDWSAGAVSL 420
  421 LTEAQPWPGE RPRRAGVSSF GISGTNAHVI IEAVPAAEPA HADAPALPVL PWMVSAKSAA 480
  481 ALRAQAARLA EYVRAHGELD IADVGWTLAG RATFEHRAVV VGGDRDRLLA GLDELSTDDP 540
  541 AASIIRGVAT PAGKTVFVFP GQGSQWLGMA TELLDTAPVF AQHIQACEEA FAEFVDWSLI 600
  601 DALRGAPGAA GMDRVDVVQP ALFAVMVSLA ELWKSVGVSP DAVIGHSQGE IAAAYVAGAL 660
  661 SLRDAARVVT LRSKLLRSLA GPGGMLSIAC STERARELLA PYGNRVSIAA VNGRSSVVVS 720
  721 GEGAALDELA AFCADLALRT RRIDVDYASH SVEVEAIRED LAQALTGIEP RSSRIAFFST 780
  781 VTGNRLDTAG LDADYWYRNI RQTVQFDQAV RSAAEHGYRT FIESSPHPAL VAGIEDTVND 840
  841 SLPGDTEAIV IPTLGRDDGG LERFLTSAAT AFVAGVNVAW RGVLDGAGFV ELPTYAFDRR 900
  901 RFWLSGEGAA ADASGLGLGT SEHPLLSAVV ELPASGGVVL TGRLSPSLQG WLTDHAVSGT 960
  961 VVFPGAGFVE LAIRAGDEVG CSTVEELTLQ APLMLPAKDS GIGSVAVQVV VGEADESGRR1020
 1021 DVSIFSRPDS DSPWVCHAQG TLSTGSIEPG ADLSAWPPAG ATKVDIADGY QRLAARGYGY1080
 1081 GPAFQGLTAA WVRGDEVFAE VRLPDAAGGV TGFGVHPALL DAAMHALIVG HQIAGDRDEV1140
 1141 VLPFAWQGVS LHAAGASAVR ARLAPAQAPG TAASRAVSLE LADGLGLPVL SVRAMVARSV1200
 1201 SERQLRAAVS AAGPDRLFEV AWAPVTVPAA HGEPPVHQVF ESLAAEGDPV GESYRRTHEA1260
 1261 LAAVQSWLTE HDSGVLVVVT RGAMALAGED VTDLSGAAVW GLVRSAQTEH PGRIVLIDSD1320
 1321 AALDDSALTA ALATGEPQVL LRDGTVYTAR VHGSRAVDGI MTPPEDRPWR LGISSAGTFE1380
 1381 NLQLEPVPNP DAALQPGQVR VALRAIATNF RDVMITLGMF THDALLGGEG AGVVVEVGPG1440
 1441 VTEFSVGDSV YGFFPDGSGT LVPGDVRLLQ HKPAHWSYPE AAGISAVFTT AYMAFIHLAD1500
 1501 VKPGQRVLVH AAAGGVGMAA VQLARHLGLE VFATASRGKW DTLRAMGFDD DHIGDSRTLD1560
 1561 FEDKFRSATG GAGMDVVLDS LAGEFVNASL RLVAPGGVFL EMGKTDIRDP GVVVREYPGV1620
 1621 RYRAFDLFEP GRPRMHQWMV ELAGLFDAGV LNPLPVTTFD IRRGRAALRY LSQARHIGKV1680
 1681 VMTVPGALSA GTVLITGGTG MAGSTLARHL VTGHGVRDLA LLSRTGPDAP GAAELVAELE1740
 1741 AAGARVQVIA CDAADRAALA GVIAGISAQR PLSGVIHAAG VLDDAMITSL TPERIDAVLR1800
 1801 AKVDAAWNLH ELTRDMNLSA FVMFSSMAGL VGSSGQGNYA AANSFLDALA AHRRAHGLPA1860
 1861 ISLAWGLWDQ ASAMTGGLDA ADLARLGRDG ILALSSDEAM ELFDTALIVD EPFLAPARID1920
 1921 LGALRAHAVA VPPMFAELVN APTRRRVDDS LAAAKSKSAL AHRLDGLPEA EQHAVLLELV1980
 1981 RSHIATVLGS PTAEAIDPDK AFQELGFDSL TAVEMRNRLK TATGLALSPT LIFDYPTPNA2040
 2041 LAGYIRTELA GAPQEITHAP VVRATDDDPI AIVGMSCRFP GGVDSPEALW QMVAEGRDVL2100
 2101 SEFPTDRGWD LAGVYNPDPD VPGTCYTRTG GFVDNVADFD PAFFGIAPSE ALAMDPQQRM2160
 2161 FLELSWEALE RAGIDPVKLR GSATGMFAGV YTQGYGMGAA PIAEGFRLTG QSSSVASGRV2220
 2221 SYVLGLEGPA VSVDTACSSS LVALHMAVQS LRSGECDLAL AGGATVNATP TVFVEFSRHR2280
 2281 GLAPDGRCKA YAGAADGTGF SEGGAMLVVE RLSDARRLGH SVLAVVRGSA VNQDGASNGL2340
 2341 TAPNGPSQQR VVRAALANAG LSAAEVDVVE GHGTGTTLGD PIEAQALLAT YGQDRGQPLW2400
 2401 LGSIKSNMGH TQAAAGVAGV IKMVLAMRHE LLPATLHVDE PSPHVDWSAG AVSLLTEAQP2460
 2461 WPGERPRRAG VSSFGISGTN AHVIIEAVPA AEPAHADAPA LPVLPWMVSA KSAAALRAQA2520
 2521 ARLAEYVRAH GELDIADVGW TLAGRATFEH RAVVVGGDRD RLLAGLDELS TDDPAASIIR2580
 2581 GVATPAGKTV FVFPGQGSQT LGMGRQLHAG YPVFAEAFDA VVAELDRHLL RPLRDVIWGD2640
 2641 DENVLNSTEF AQPALFAVEV ALFRLLESWG VRPDFVMGHS IGELSAAHVA GVLSLQNAAV2700
 2701 LVAARGRFMQ ALPEGGAMIA VQATEAQVRP LLGPDVGIAA VNGPAAVVIS GDHDAAVAIA2760
 2761 ERLRAEGHRV HRLSVSHAFH SPLMEPMIDE FGTVAAGLAS DKPVIPIISN LTGQPAADDF2820
 2821 GSPEYWKRHV RDAVRFADSV RFAQSAGATR FLEVGPSSGL TAAIEETLAD APVVTVSALR2880
 2881 KDRPEPVALV NAVAQGWVCG MDVDWRGALG TGHLVDLPTY AFDRRRFWLS GDGAASDAAG2940
 2941 LGLAAGDHAL LGAVVELPAS GGVLLTGRLS SASQGWLADH AVGGVVLFPG AGFVELAIRA3000
 3001 GDEVGCGIID ELNLAAPLVL PAGGSVAIQV VVDGPDDSGA RAVSVFSRAD AGAGWLLHAE3060
 3061 GVLRAGSAQP ATDLSAWPPV GAVPVDLGDG YEQLAERGYR YGPAFRGLTS MWRRGDEIFA3120
 3121 EVNLPTDAGV STTGFGVHPV MLDAALHAVM LASDGDELPA GSMLVPFSWQ RVSLHAAGAA3180
 3181 AVRARIVPVS PSAVSIELAD GLGLPVLSVA SMVARPVTDQ QLLAAVSNSG PDRLFELIWS3240
 3241 AQPSTAVQPV SLLNWGATEL DATDTDSDSG RFAVLFESAP VAGDVVTEVY AATRAVLPVL3300
 3301 QTWLARDGAG TLVVSTRGAM TLPREDVTDL AGAAVWGLVR SAQTEHPGRI VLVDTDAPLD3360
 3361 ADAVAAVLAV GEPQTLLRNG TVYTARVLGS RAVGALLVPP EDGPWRLGMS SYGTIENLRL3420
 3421 EPIPDADAPL GPGQVRVATS ALAANFRDVM IALGLYPDPD AVMGIEASGV VIETASQDGR3480
 3481 VAVGDRVMGL FPDGTGTVAI TDQRLLVKVP AGWSHTAAAT ASVVFATAYY ALVDLADARP3540
 3541 GQRVLVHAAA GGVGMAAVQL ARHFGLEVFA TASRGKWDTL RDMGFDDDHL GDSRGLDFED3600
 3601 KFRAVTGGAG MDIVLDSLSG DSVDASLRLV APGGIFLEMG KTDIRDPEVV AAEHPGVRYR3660
 3661 AFDLFEAGPD RIARLLDELA AMFGEDVLRP LPVTRFDVRR APAALRYLSQ ARHVGKVVMT3720
 3721 MPDAWTAGTV LITGATGMAG SAVARHVVTR HGARNLVLVS RRGLDAPGAA ELVAELTAAG3780
 3781 ARAEVVACDA ADREALAKVI ADIPMQHPLT GVIHAAGVLE DAVVTSLTPQ RIDTVLRAKV3840
 3841 DAAWNLHELT RDLDVGAFVM FSSIAGLAGA SGQGNYAAGN SFLDGLAAHR RAHGLPAISL3900
 3901 GWGLWDQASA MTGGLGAADL ARFGRDGIVA MSSQEALELM DTALIVDEPF LLPAHIDLAA3960
 3961 LRAKFDGGTL PPMFVDLINA PTRRQVDDSL AAAKSKSALL QRLEGLPEDE QQAVLLDLVR4020
 4021 SNIATVLGSS SPEAIHPDRA FQELGFDSLT AVEMRNRLKA ATGLALSPTL IFDYPNSAAL4080
 4081 AGYMYRELVG TSEQPTAAAA PGEAEIQRVV GSIPVKRLRQ AGVLELLLAL ANESTGTAQS4140
 4141 ATPAVTTEKD IADMDLDDLV NAALLDDDDE 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle