YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85077833
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSARYERVNV HADDDDDHHN DTPTPTNPTS MTRPSIPNSP PPSFHSRASS IHNSQRPVNP  60
   61 DLADAFGADE DDDDSGDDAD DRQRLMRRNS SPTEASGAAG STETTSGGSS RPGPERQTTQ 120
  121 LPTTSYTTTA GGSATQTSGR VYGGGIQNEG VFSNLTAKPE RNNGAEKEEL PPSYEQAAAD 180
  181 AAPPYWETTI LAPGLGGPDD VYIEGMPVGS IVSFIWNGMI SMSFQLVGFL LTYLLHSTHA 240
  241 AKNGSRAGLG ITLIQFGFMM KGTQESGAEG DGYTAPPDPN SHDFDPGAVD DNRGGDNWGS 300
  301 VDSSDWVAYI LMLVGWFILI KSVSDYMKVR RHEMLVLQSP DRGLGIPIIA TGEAPERVV

Type	Start	End	Confidence
Cytoplasmic	1	212	0.53
Transmembrane Helix	213	235	0.87
Non-Cytoplasmic	236	305	0.78
Transmembrane Helix	306	324	0.92
Cytoplasmic	325	359	0.96