YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39998522, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQALFYILA AVTVIATVLA ITEKHAVHAI VYLVTSFFAL AVIFFTLGAP VVAVFEVIIY  60
   61 AGAIMVLFLF VIMMLDLGHP ERARRPGIRD WWPALALGAV TLASALTLLI SRAQAASAAG 120
  121 RAIGVKEFAL TLFGKYGVAV EVISMQLLFA LVGALYLAKR RER

Type	Start	End	Confidence
Non-Cytoplasmic	1	3	0.88
Transmembrane Helix	4	22	0.83
Cytoplasmic	23	28	0.86
Transmembrane Helix	29	49	0.93
Non-Cytoplasmic	50	56	0.70
Transmembrane Helix	57	78	0.92
Cytoplasmic	79	90	0.91
Transmembrane Helix	91	111	0.93
Non-Cytoplasmic	112	136	0.87
Transmembrane Helix	137	158	0.93
Cytoplasmic	159	163	0.95