YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39985460, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDKHDLIIL GSGSTAFAAA LRAHSRGARV LMVEKSVLGG TCINWGCVPS KTLIHGALFY  60
   61 QEGRLGARLG LGECGNAVDL APLMTRKEEV VKHLRTTRYL DILRNTPGLE LAKGTGRFLG 120
  121 SGRLEVVDQV YRCDRYLVAV GGTPRIPKIP GLESTPFLTS RGALLLKRFP ASLIIIGGGV 180
  181 IAVELGQMFQ RLGTRVTILE HGPRILAPIE PEPALAIRNV LRDEGMEIIC HSPVCAVSGD 240
  241 GSAVSVEVER EDGRRTYTAE KLLLAVGTTP ATRGIGLELA GVETDGRGFV TVDERMRTTA 300
  301 PGIWAAGDCT GGMMIATVGA REGIIAVDDM FATGCGCAMD HLSVPMAIFT DPEVGAVGYT 360
  361 EQGARDAGLD PIVSILPVSA IPKAHVTGHT AGVIKLVAER ATGRLLGAHL ACHRGAELIN 420
  421 EAALAIRLKA TFEDLANALH VYPSIGEGLR LCAQGFTRDV SKLSCCAE

Type	Start	End	Confidence
Signal Peptide	1	23	0.67
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	468	0.88