YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39985441, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDQDRVRPA VVEVGDGAAI PSKSDIGLFT AWRIAFVGAI GILVVLTITK PDPYLNILKF  60
   61 VPDGILVTFQ VTVGAILLAL VIGLVAGLGR ISSNRIINGI ASLYVEIIRG IPLLVQLFYI 120
  121 YYALGRFVHV PDMASAIIAM AVCYGAYMGE VIRAGIQSIP KGQMEAARSL GMTKGQAMRH 180
  181 VILPQAAKVV LPPIGNEFIA LLKDSSLVSI LAVADILRRG REFASESFTY FETYTVIALV 240
  241 YLIITLFLSK LIGIMEERIS AGS

Type	Start	End	Confidence
Cytoplasmic	1	28	0.98
Transmembrane Helix	29	49	0.94
Non-Cytoplasmic	50	65	0.92
Transmembrane Helix	66	89	0.89
Cytoplasmic	90	99	0.83
Transmembrane Helix	100	123	0.81
Non-Cytoplasmic	124	132	0.70
Transmembrane Helix	133	152	0.84
Cytoplasmic	153	227	0.69
Transmembrane Helix	228	254	0.77
Non-Cytoplasmic	255	263	0.55