YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39985430, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLQQLINGI ALGSTYALIA LGYTMVYGII ALINFAHGEI FMAGAFVGLL MVAVFKMNIF  60
   61 VAMILAMATC MVMGVVIELI AYRPLRKSSR LSALISAIGV SIFLSTLALM IFGADAKGFP 120
  121 DTAFPVRQVK VLGAEISTLQ LLIIGVSALL MLGLEFIVQK TKIGKAMRAT SEDYNTAALM 180
  181 GINVNRVISF TFALGSSLAA AGGVLVGLLF NAVSFNMGLM AGLKAFSAAV LGGIGSIPGA 240
  241 MLGGLLLGVA EVMGVAAGYS SYRDAIAFAI LVLVLLVKPT GLLGQKIQKK V

Type	Start	End	Confidence
Cytoplasmic	1	11	0.59
Transmembrane Helix	12	38	0.78
Non-Cytoplasmic	39	58	0.52
Transmembrane Helix	59	82	0.87
Cytoplasmic	83	90	0.90
Transmembrane Helix	91	114	0.90
Non-Cytoplasmic	115	135	0.89
Transmembrane Helix	136	158	0.87
Cytoplasmic	159	186	0.73
Transmembrane Helix	187	213	0.81
Non-Cytoplasmic	214	224	0.43
Transmembrane Helix	225	250	0.81
Cytoplasmic	251	261	0.35
Transmembrane Helix	262	284	0.77
Non-Cytoplasmic	285	291	0.38