YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MTNA_GEOSL
Protein type:	Transmembrane
Type Confidence:	0.67
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFRTIEWRD DKVVMIDQTR LPGEEVYCEY ADYKSVAEAI RGMVIRGAPA IGVAAAMGVA  60
   61 LGAREIIADT YESFFRQMEN VCDVMARTRP TAVNLFWAIE RMKRVADENR DKPLDQLREI 120
  121 LKTEAIRIEQ EDLELCKAIG RHGAALIPEG ATVLTHCNAG GLATAGYGTA LGVIRAAHDA 180
  181 GKKIQVFADE TRPWLQGARL TAWELMKDGI PVTLISDNMA GFFMKRGEIA CCVVGADRIA 240
  241 ANGDTANKIG TYSVAVLAKE NNIPFYVAAP TTTLDLSLEN GDQIPIEERH SREVTHLHGF 300
  301 PVAPEGIRVR NPAFDVTPAR YISAIITEQG VVSGDYVTGL RGLVAP

Type	Start	End	Confidence
Cytoplasmic	1	43	0.64
Transmembrane Helix	44	63	0.60
Non-Cytoplasmic	64	346	0.94