YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39985408, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISYLDDVFL FVCAGIAIAL SVGSAGHALV MKRDPRSALG WIVVCLTVPL FGPIFYWSMG  60
   61 VNRIFRRARK WQETGRRLAG GEHFRSAQEH ESAPTPPAGA EYLSELRHLA DRVVGAPLVQ 120
  121 GNRIIPLDGG EGAYPAMLEA IAHARSSVHL STYIFDSDST GRRFITTLAA AAARGVIVRV 180
  181 IVDGVGEKYS WPRARTLMEG TGIRVERFLP LRQGIYMNLR NHRKVLVVDG QLAFTGGMNI 240
  241 GDRHVAEKAG DAVSRDVHFS VAGPVVAGLQ QVFLEDWHFV TGELLDDTRY FPPIQPAGHA 300
  301 LARPIGDGPD KEYHTLHWII MGALSCATRT VQIMTPYFIP DRSLVSALVT TALRGVEVTL 360
  361 VLPEKNNLPF VHWATRAYLW ELIQQGIRVF YQPPPFAHTK LFIVDGLWSM IGSANLDPRS 420
  421 LRLNFELNLE VYDRELAGTL SRHFAVTVAR SRQVSLTEMD GRPLPEKVRD ATAKLFSPYL 480
  481

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.58
Transmembrane Helix	8	30	0.95
Cytoplasmic	31	37	0.55
Transmembrane Helix	38	60	0.92
Non-Cytoplasmic	61	480	0.66