YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39985352, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKWLLVASAA LYLFGSFRRP LFALGLGAGL AYLALRGISL GRLPLVGPHD TIAFFSASIG  60
   61 LMTLPFLFSP SLRNSSAFPW ATGGTAAVFA LFSLAFPALA MPLPPILNTL WFELHVALAF 120
  121 FAYALFTIGA IMGVLFLAGG ERRLLDLQYR AALVGYTFFS GSMVAGGIWG YYAWGTYWLW 180
  181 TPKELWTSIL WIFYTFWLHL RLRGAGGDRL LAWTGILGFG VMLFTYLGVS MLMKSSHSF

Type	Start	End	Confidence
Cytoplasmic	1	20	0.90
Transmembrane Helix	21	40	0.91
Non-Cytoplasmic	41	50	0.77
Transmembrane Helix	51	69	0.95
Cytoplasmic	70	77	0.83
Transmembrane Helix	78	100	0.90
Non-Cytoplasmic	101	116	0.86
Transmembrane Helix	117	139	0.92
Cytoplasmic	140	151	0.87
Transmembrane Helix	152	173	0.92
Non-Cytoplasmic	174	181	0.79
Transmembrane Helix	182	200	0.88
Cytoplasmic	201	209	0.84
Transmembrane Helix	210	230	0.94
Non-Cytoplasmic	231	239	0.82