YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39998380, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.86
Transmembrane Helix	7	29	0.95
Cytoplasmic	30	55	0.93
Transmembrane Helix	56	75	0.93
Non-Cytoplasmic	76	81	0.74
Transmembrane Helix	82	101	0.96
Cytoplasmic	102	120	0.89
Transmembrane Helix	121	146	0.86
Non-Cytoplasmic	147	159	0.90
Transmembrane Helix	160	181	0.88
Cytoplasmic	182	231	0.97
Transmembrane Helix	232	251	0.89
Non-Cytoplasmic	252	259	0.66
Transmembrane Helix	260	281	0.91
Cytoplasmic	282	289	0.88
Transmembrane Helix	290	311	0.92
Non-Cytoplasmic	312	323	0.85
Transmembrane Helix	324	345	0.90
Cytoplasmic	346	370	0.75
Transmembrane Helix	371	397	0.68
Non-Cytoplasmic	398	398	0.31
Transmembrane Helix	399	422	0.69
Cytoplasmic	423	461	0.71
Transmembrane Helix	462	483	0.79
Non-Cytoplasmic	484	496	0.72
Transmembrane Helix	497	519	0.82
Cytoplasmic	520	568	0.77
Transmembrane Helix	569	588	0.76
Non-Cytoplasmic	589	593	0.52
Transmembrane Helix	594	615	0.87
Cytoplasmic	616	680	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQYAVYFAL VCAAAAVVYG LASAQWILGL PQGNERMRQI AAAVQEGAGA YMKRQYTIIA  60
   61 VVGVVMFIAL FATLGMKTAV GFAIGAIFSG LTGFIGMFVS VRANIRTTEA AKSGIHKALN 120
  121 VAFKGGAITG MLVVGLGLLG VAGYYLVLQQ LMPGAPVKDI VSQLVGLGFG GSLISIFARL 180
  181 GGGIFTKGAD VGADLVGKVE AGIPEDDPRN PAVIADNVGD NVGDCAGMAA DLFETYAVTL 240
  241 IAAMLLGAIA FNNFSGAVTY PLILGGISII ASIIGTFFVK LGASQKIMPA LYKGLIASGV 300
  301 IACIAFYFVT VQMFPEGNPT GYSATNIFIS AIVGLVVTGA IFWITEYYTA TEYAPVKHIA 360
  361 QASTTGHATN IIAGLGVSMK STAMPIIVIA AGIIVAFQCA GVYGIAIAAV SMLSLTGIVV 420
  421 AMDAYGPITD NAGGIAEMAE LDDSVRAVTD PLDAVGNTTK AVTKGYAIGS AGLAAVILFT 480
  481 SYVDELKLAG QNIEFSLADP YIIVGLFLGG MLPYYFAALC MEAVGKAGGS VVEEVRRQFR 540
  541 EIKGIMEGTG KPDYAACVDI VTKSALKEMV IPGIIPIAAP VIIGFTLGPK ALGGVIVGTI 600
  601 VTGIFVAISM TTGGGAWDNA KKYIEDGYHG GKGGEAHKAA VTGDTVGDPY KDTAGPAVNP 660
  661 MIKIINIVSL LIVPLLAKMG