YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39985318, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAVLFVATL LLYLAATVAY LAFLVKPREV LGKISRWVLT GGFVVHAVYT VDRYIEAGYT  60
   61 PITNLHESLS FFGLAIAGVY LIFERKYRTI ILGSFVTPLV LLILIGSTGF PSAISPLNPA 120
  121 LKSRWLAVHT VMAFLSYAAF AVAFGAAIMY LIQEHFLKSK KLGALYQKLP SLDVLDEINY 180
  181 RCLTLGFPLL TFAIISGAIW AESAWGTYWS WDPKETWSLI TWFVYAALLH GRLTTGWRGK 240
  241 KAAWLAIIGF FVLLFTFLGV NLFMSGLHSY T

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.89
Transmembrane Helix	5	25	0.90
Cytoplasmic	26	33	0.86
Transmembrane Helix	34	51	0.88
Non-Cytoplasmic	52	62	0.76
Transmembrane Helix	63	83	0.91
Cytoplasmic	84	89	0.92
Transmembrane Helix	90	114	0.86
Non-Cytoplasmic	115	130	0.86
Transmembrane Helix	131	152	0.93
Cytoplasmic	153	181	0.92
Transmembrane Helix	182	201	0.91
Non-Cytoplasmic	202	215	0.83
Transmembrane Helix	216	234	0.91
Cytoplasmic	235	242	0.83
Transmembrane Helix	243	265	0.91
Non-Cytoplasmic	266	271	0.84