YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39998358, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	309	0.94
Transmembrane Helix	310	329	0.94
Non-Cytoplasmic	330	353	0.81
Transmembrane Helix	354	369	0.43
Cytoplasmic	370	375	0.36
Transmembrane Helix	376	400	0.88
Non-Cytoplasmic	401	420	0.46
Transmembrane Helix	421	443	0.64
Cytoplasmic	444	454	0.72
Transmembrane Helix	455	476	0.82
Non-Cytoplasmic	477	487	0.59
Transmembrane Helix	488	506	0.95
Cytoplasmic	507	543	0.82
Transmembrane Helix	544	563	0.90
Non-Cytoplasmic	564	685	0.49
Transmembrane Helix	686	708	0.90
Cytoplasmic	709	716	0.54
Transmembrane Helix	717	741	0.80
Non-Cytoplasmic	742	747	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVQAKKRNG LTEDEQGDGQ KAFLRPVTKR AITVAVAGNP NSGKSTLINA IAGTRLQVGN  60
   61 WAGVTVEKKE ASFEFQGRKI RLVDLPGTYS LSPYTQEEII ARDYLVHERP DLIINVVDAT 120
  121 NLERNLYLTV QLLELGIPLV MALNIYDEAE AKGYAIDVKG IEQMLGITVV PTSATRRSGL 180
  181 DELLAGVDRT ADDPAVHTPA RLNYGEDIET AAEFVESALG KNHPQLVEKY PPRWLVLKLM 240
  241 EGDGHVAKEA NFGHDAMLDE ALHHLRRAHG EDIEALMADA RYGLASGLTR EVLKKPELRR 300
  301 MELTEKIDRI VLNRFLGIPI FLAAMWLVFK LTFDLSSPFA DWIDGMAGGP FKRWSEAILG 360
  361 GIGAPDWTVS LVNDGVIAGV GFVLVFVPVI FAMMFFITFL EGSGYMARAA FVMDRAMHAI 420
  421 GLHGKSFIPM LLGFGCNVPG IYATRTLENP RDKALTALLL PLMSCGARLP VYVLFAGTFF 480
  481 AANSGTVIWS LYVMGIVLAM AMGLIFKKTL FRGEAPMFIM ELPPYRMPSF RSLCLHTWEK 540
  541 GKHFLIKAGT YILAVSIFVW FLLNLPWGVE NKKDSCLGQA GQVVAPALAP LGFGTWEAAS 600
  601 SLITGVIAKE IVVGTMGEIY APEKKEKEKS EAPAPTLGED LKEIAVSFGV AAKTAVTTTL 660
  661 GIGGAAEEEE DQTSLKAAVG QAFTPLSAYA FMCFVLLYMP CVVVAIAMRQ EFGSWKWFGV 720
  721 AFLYQTALAW GVAFIVYQGG TLLGLGG