YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LSPA_GEOSL
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPTYRIFNA VVLGSLVLDQ ATKVLIDRTM DLYQSIPVID GLFSITYLRN RGAAFSFLAD  60
   61 FSYRLPFFIL VSVVALGVIA VTFRKLRDDQ HLAAAALALI FSGALGNLID RVRLGEVIDF 120
  121 LDVYWKTYHW PAFNVADSAI CVGVALLAVD MIREERRKAP

Type	Start	End	Confidence
Non-Cytoplasmic	1	62	0.64
Transmembrane Helix	63	83	0.93
Cytoplasmic	84	90	0.86
Transmembrane Helix	91	109	0.93
Non-Cytoplasmic	110	129	0.84
Transmembrane Helix	130	149	0.93
Cytoplasmic	150	160	0.84