YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39998118, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIATIIGLV MGFGAVFGGA LLEGLHLTAL IQPTAAIIVL GGTFGAAFVS FPMKTIIGAA  60
   61 KDIKKVLMPA QNDPEKVIKD LIGYAAKARR NGLISLEQEA QNVKDPFTKK GISLVVDGID 120
  121 PQKLRETLEI EVTYYEEHAK QSAEFFEAAG GYAPTIGIIG AVLGLIHVMG NLSDSSKLGA 180
  181 GIAVAFVATI YGLMTANIIC LPFGTKIKHG IKEELICKNM IIEGLIAIQN GENPHFIEQK 240
  241 LKAFLQHGAG DKKG

Type	Start	End	Confidence
Cytoplasmic	1	6	0.84
Transmembrane Helix	7	27	0.92
Non-Cytoplasmic	28	34	0.68
Transmembrane Helix	35	57	0.88
Cytoplasmic	58	147	0.99
Transmembrane Helix	148	170	0.90
Non-Cytoplasmic	171	178	0.89
Transmembrane Helix	179	201	0.92
Cytoplasmic	202	254	0.96