YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39985044, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLYFIALQF LTVVPLPFRL RWDERALGRS MAFFPLAGLT LGTLLAGADM LFAALVPRPV  60
   61 SDLLLVALLA GVTGALHLDG LADVCDGLAA RGGRERFLAV MKDPRVGAVG VVGLVLGLAL 120
  121 KYQALLAVPD DLKRQALLLF PAVARYAQVQ MTVGANRARQ DGLGAAFIAG TGMFQLVTAG 180
  181 TITAVAAWLL LGPAGMAVLA ASVLFTGGFR WWFHRHLGGV TGDVIGCASE LNEILCLLVI 240
  241 LALHRG

Type	Start	End	Confidence
Cytoplasmic	1	30	0.76
Transmembrane Helix	31	53	0.88
Non-Cytoplasmic	54	62	0.77
Transmembrane Helix	63	85	0.83
Cytoplasmic	86	105	0.82
Transmembrane Helix	106	125	0.79
Non-Cytoplasmic	126	134	0.65
Transmembrane Helix	135	149	0.45
Cytoplasmic	150	162	0.53
Transmembrane Helix	163	187	0.78
Non-Cytoplasmic	188	188	0.45
Transmembrane Helix	189	213	0.82
Cytoplasmic	214	223	0.65
Transmembrane Helix	224	243	0.57
Non-Cytoplasmic	244	246	0.37