YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39985038, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHVLSASPA DHPLSRLDPR VKLLTAGALL AMVISCTGGL FPLLAAILSL GIVVSLGVPL  60
   61 RLILLRFAEP AFIAAVVLLL KLFFSGVTPL FTLQLPWLEL TAYREGLREG LLIAGRIAAA 120
  121 VSVVSAVGFS SSFTDLMAAL AWLRVPRSFI EVALFAWRYL FLLLDDAQVI HAAQRNRLGY 180
  181 SGLRRGMRSF GTLAGALVLK AFDNSQTITT AMVQRGYDGN LPLFRHRPFR PAEVALSALF 240
  241 VVAMGTLWGM Q

Type	Start	End	Confidence
Cytoplasmic	1	20	0.93
Transmembrane Helix	21	41	0.86
Non-Cytoplasmic	42	44	0.51
Transmembrane Helix	45	65	0.77
Cytoplasmic	66	71	0.64
Transmembrane Helix	72	93	0.90
Non-Cytoplasmic	94	111	0.65
Transmembrane Helix	112	137	0.81
Cytoplasmic	138	228	0.64
Transmembrane Helix	229	250	0.85
Non-Cytoplasmic	251	251	0.63