YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39998067, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHQAIDWLVA TIGAMGYPGI FILMAMESSV FPVPSELVMP PAGYLAQQGE MNIWLAIFLG  60
   61 TAGSLAGAYA NYFAAHYLGR PLLLKYGKYV WITEEKFARV ESFFHKHGEI STFIGRLLPV 120
  121 VRHLISLPAG LAGMHHGTFT LYTLLGAFIW CTILAWIGYV IGENRDLIME YSHQALIGVV 180
  181 IFSVALVAVY VWRHRRKK

Type	Start	End	Confidence
Cytoplasmic	1	6	0.93
Transmembrane Helix	7	31	0.84
Non-Cytoplasmic	32	52	0.90
Transmembrane Helix	53	75	0.92
Cytoplasmic	76	138	0.93
Transmembrane Helix	139	160	0.91
Non-Cytoplasmic	161	171	0.87
Transmembrane Helix	172	192	0.94
Cytoplasmic	193	198	0.87