YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39984997, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPFTPADID AIRLSAKVAV AATVVSLPFG IAVAYVMSYL PFRGKTLVEA FLNLPLTLPP  60
   61 VVIGYLLLLL LGKKGWLGGM LNEVGIRIIF TWYAAVIASA VVGFPLLVRS IRIAMESIDE 120
  121 RLIQASRSLG AHWYDTLLTV ILPLSLRGIV AGSSLMFGRS LGEFGATIII AGNIPGVTQT 180
  181 MPLAIYEYAG SPGGEQAALT LCLVSAGLSL AVLFVHEYVG RRMMRRD

Type	Start	End	Confidence
Cytoplasmic	1	17	0.69
Transmembrane Helix	18	39	0.90
Non-Cytoplasmic	40	49	0.65
Transmembrane Helix	50	72	0.86
Cytoplasmic	73	87	0.63
Transmembrane Helix	88	108	0.93
Non-Cytoplasmic	109	130	0.69
Transmembrane Helix	131	151	0.78
Cytoplasmic	152	163	0.51
Transmembrane Helix	164	185	0.71
Non-Cytoplasmic	186	196	0.84
Transmembrane Helix	197	216	0.97
Cytoplasmic	217	227	0.84