YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39998045, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.94
Transmembrane Helix	15	34	0.96
Non-Cytoplasmic	35	45	0.76
Transmembrane Helix	46	66	0.90
Cytoplasmic	67	86	0.85
Transmembrane Helix	87	106	0.95
Non-Cytoplasmic	107	111	0.93
Transmembrane Helix	112	132	0.93
Cytoplasmic	133	144	0.78
Transmembrane Helix	145	166	0.84
Non-Cytoplasmic	167	188	0.77
Transmembrane Helix	189	209	0.91
Cytoplasmic	210	224	0.84
Transmembrane Helix	225	243	0.93
Non-Cytoplasmic	244	255	0.75
Transmembrane Helix	256	277	0.91
Cytoplasmic	278	288	0.88
Transmembrane Helix	289	310	0.89
Non-Cytoplasmic	311	316	0.68
Transmembrane Helix	317	340	0.89
Cytoplasmic	341	350	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEHVSRRLS FLDRWLTVWI FAAMALGVGL GWLVPGVEQF INRFQVGTTN LPIAAGLILM  60
   61 MYPPFAKVKY EEMPEVFRNK KILALSLVQN WLIGPVLMFV LAVVFLPDKP EYMVGLIMIG 120
  121 LARCIAMVIV WNELAKGNTE YAAGLVAFNS IFQVLFYSAY AWVFITVLPP LFGLSGSLVE 180
  181 VSIGQIAESV FVYLGIPCLA GALTRLIGVN VMGKERYHRE VVPRIGPITL IALLFTIVVM 240
  241 FSLKGNLIVQ LPFDVVRIAM PLLIYFVVMF LISFWMGKRL GADYSKTTTL AFTAASNNFE 300
  301 LAIAVAVAVF GLNSGAAFAA VIGPLVEVPV MIGLVNVAFW LQRHWFRAAA