YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39997981, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSSFAHITI IHWVAVVVYV IATIFNVSGL MFRKERAVAV SEALVLGGLL VHGIGILWWW  60
   61 KIVGHGPYIG RFEVLSSHAW AVLALFMASS RFFPRIKAAS ILVFPVTFLM IAVGLFIEPQ 120
  121 AKMLPPTLRS VWLVLHVIFY KISLFTLLVA LAFSLFYLLR KRTGISWLQR LPELEILDIL 180
  181 SFRFAGFSFT FWGIAMVAGS IWAYQSWGRF WGWDPVETWS LMTWIAFGIY LHLRRFFGWN 240
  241 GERAAYLYLI CFVLSVISLL FTPLIGSSIH SEYFK

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.93
Transmembrane Helix	8	30	0.91
Cytoplasmic	31	37	0.88
Transmembrane Helix	38	60	0.89
Non-Cytoplasmic	61	68	0.83
Transmembrane Helix	69	89	0.84
Cytoplasmic	90	97	0.71
Transmembrane Helix	98	117	0.92
Non-Cytoplasmic	118	136	0.88
Transmembrane Helix	137	159	0.95
Cytoplasmic	160	178	0.98
Transmembrane Helix	179	203	0.90
Non-Cytoplasmic	204	215	0.87
Transmembrane Helix	216	234	0.89
Cytoplasmic	235	244	0.80
Transmembrane Helix	245	266	0.94
Non-Cytoplasmic	267	275	0.88