YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39984916, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPTPSFAAY VGAHWAAVVI YVIATVVNVY GLLFRSEPAE RWSYRLISVG WMIHSVVIAY  60
   61 WWWVTGHGPY LSRNEVLSSD AWIALTVFMC FQRLYPRVRP ASIVVFPSVF LMIALGLFFD 120
  121 VQIRTLPPTF SGIWLVIHIA FYKIALGTIL IALACSIFLV LKKRTPFAWL QRLPDLESLD 180
  181 LHAYRFAGFG FIIWAIAMLA GSIWAYKSWG RFWGWDPVEN WSLITWILFG IHLHLRRFFR 240
  241 WSGERAALFY VVCFIFSLVA LFYTSHMDTS IHMEYFR

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.92
Transmembrane Helix	12	34	0.92
Cytoplasmic	35	41	0.96
Transmembrane Helix	42	64	0.90
Non-Cytoplasmic	65	75	0.86
Transmembrane Helix	76	95	0.88
Cytoplasmic	96	102	0.81
Transmembrane Helix	103	123	0.91
Non-Cytoplasmic	124	138	0.92
Transmembrane Helix	139	161	0.95
Cytoplasmic	162	180	0.98
Transmembrane Helix	181	205	0.90
Non-Cytoplasmic	206	217	0.88
Transmembrane Helix	218	236	0.88
Cytoplasmic	237	245	0.85
Transmembrane Helix	246	266	0.94
Non-Cytoplasmic	267	277	0.94