YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39984790, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.71
Transmembrane Helix	17	41	0.87
Cytoplasmic	42	49	0.76
Transmembrane Helix	50	70	0.93
Non-Cytoplasmic	71	91	0.78
Transmembrane Helix	92	118	0.79
Cytoplasmic	119	137	0.72
Transmembrane Helix	138	160	0.88
Non-Cytoplasmic	161	167	0.80
Transmembrane Helix	168	190	0.90
Cytoplasmic	191	233	0.88
Transmembrane Helix	234	256	0.87
Non-Cytoplasmic	257	264	0.84
Transmembrane Helix	265	286	0.89
Cytoplasmic	287	295	0.71
Transmembrane Helix	296	315	0.94
Non-Cytoplasmic	316	332	0.79
Transmembrane Helix	333	353	0.86
Cytoplasmic	354	359	0.66
Transmembrane Helix	360	389	0.76
Non-Cytoplasmic	390	414	0.56
Transmembrane Helix	415	438	0.85
Cytoplasmic	439	442	0.44

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMFWIQFVL VLGAVLIGIR RGGVALGLIG GLGVSLLVLG FRSSPSEPPI AVMLIILAVV  60
   61 TASATLQVAG GLDYLVQLTE KLLRAHPKYV TILAPLSTFF LTVCVGTGHA VYALLPVIAD 120
  121 VAIKTGIRPE RPMAISSVAS QMGITASPVA AAVTFFLGFA SKSGYPVTLI DIISVTMPAG 180
  181 VIGVLVAAAW SFNRGKDLDK DAEYQERLKD AEFRKALDVD VTTLDKKIST TAKVSVALFF 240
  241 AGVATIILFA VFPDLLPLNG EKKPVPMTTV VQFIMLAYGA FIMFAADVKA KDIAHSSVFT 300
  301 AGMIAVVSIF GIAWMSDTFI SANKKFLVDN IGVMVKMAPW TFAIATFCIS AFVKSQAATL 360
  361 AITLPLGLAL GLPVPLLLGL MPASYAYFFF AFYPSDLAAI NFDRTGTTRI GKYLLNHSFM 420
  421 IPGLIGVSVS TLAAYGISQF VL