YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39997777, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIAIVGAGA LGLYYGALLQ RAGEDVHFLL RRDFEAIVRN GLKVFSTDGD FVLPHVKGYR  60
   61 TPDEIGAADL VLVGLKTFAN DRYEELIRPL VGAETRILTL QNGLGNEEAL AALFGPERVI 120
  121 GGVAFLCSNR GEPGEVHHLG AGRITLGEFL PRDREWTEAL AALFVRAGVE CRATGDLKRA 180
  181 RWEKLVWNIP FNGLCALLQQ PVNLLLARDA SRTLVREIMH EVIAAANAQG LTVPIAPAYA 240
  241 DSMLEFTDRM GEYKPSMQID REEGRPLEIW AIFRTPLAYG SQRGIAMPRV EMLATLLEQS 300
  301 AG

Type	Start	End	Confidence
Signal Peptide	1	19	0.73
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	302	0.99