YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39997744, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLLFAPNDC REGGAVPLPA RIVGILIAFL LVTLIFAYAF HSLQYHWGWE SVYAYRQKFV  60
   61 NGWLMTLAIS AAALLLSLAI GLCTALTQRS RLLPLRYLGR IYVETIRGTP LLVQILVFFY 120
  121 VVADAFGVGD RYLVGVITLS LFAGAYISEM IRAGIESVGD SQMESARAIG LTRAQIYRYV 180
  181 VFPQAFRQTL PPLAGQFASI VKDSSLLSII AVSEFTLNAQ EVNAFTYSTL ESYLPLAIGY 240
  241 LAITLPISLL SRRLEKKFRY AT

Type	Start	End	Confidence
Cytoplasmic	1	20	0.94
Transmembrane Helix	21	41	0.95
Non-Cytoplasmic	42	62	0.92
Transmembrane Helix	63	86	0.91
Cytoplasmic	87	104	0.89
Transmembrane Helix	105	123	0.90
Non-Cytoplasmic	124	131	0.64
Transmembrane Helix	132	151	0.74
Cytoplasmic	152	197	0.64
Transmembrane Helix	198	212	0.42
Non-Cytoplasmic	213	231	0.69
Transmembrane Helix	232	251	0.82
Cytoplasmic	252	262	0.90