YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39997634, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKVLIIGAG GVGQVVAHKC AQRRDIFSGI TLASRTKSKC DAIAAQLNNS IATAQVDADN  60
   61 VPELVALIKK EQPKLVINVA LPYQDLTIMD ACLETGVDYL DTANYEPLDT AKFEYSWQWA 120
  121 YQDRFKSAGL MALLGSGFDP GVTNVYTALA AKKYLDEVQE IDIIDANAGS HGQPFATNFN 180
  181 PEINIREVTA PCRHWENGEF VETPPLSTKQ VFDFPEGIGP MNIYRLYHEE MESIVKHIPT 240
  241 IRKAQFWMTF SDNYLKHLEV LQNVGMTRID EVEFQGQKIV PIQFLKALLP DPGSLGPLTK 300
  301 GKTCIGVIAR GLKDGKRKQV YIYNICDHEA CYKEVGSQAI SYTTGVPAVV GGIMMLTGKW 360
  361 HAPGVWNMEQ FDPEPFLAEL GPMGLPTVVV DGGEWPEL

Type	Start	End	Confidence
Signal Peptide	1	17	0.90
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	398	0.98