YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39997585, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.93
Transmembrane Helix	10	31	0.92
Non-Cytoplasmic	32	52	0.93
Transmembrane Helix	53	74	0.89
Cytoplasmic	75	80	0.89
Transmembrane Helix	81	100	0.92
Non-Cytoplasmic	101	106	0.74
Transmembrane Helix	107	129	0.89
Cytoplasmic	130	140	0.85
Transmembrane Helix	141	162	0.90
Non-Cytoplasmic	163	174	0.81
Transmembrane Helix	175	195	0.93
Cytoplasmic	196	234	0.97
Transmembrane Helix	235	259	0.89
Non-Cytoplasmic	260	266	0.79
Transmembrane Helix	267	287	0.94
Cytoplasmic	288	296	0.84
Transmembrane Helix	297	317	0.94
Non-Cytoplasmic	318	323	0.76
Transmembrane Helix	324	345	0.91
Cytoplasmic	346	357	0.83
Transmembrane Helix	358	379	0.90
Non-Cytoplasmic	380	389	0.85
Transmembrane Helix	390	411	0.91
Cytoplasmic	412	455	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEQVKNKGW QVALAGTGIN LALGVLYAWS IFKGAIKTSI EKGGPGAFDW DLASINDPYA  60
   61 VCCLTFAFAM ILAGKCQDKI GPARTALIGG LLVGIGFTLL SQSNAYMAWV MGFGILAGAG 120
  121 FGFGYSAATP PALKWFPSSK TGLIAGIVVA GFGLAPVYIA PVSSYLLGTV GIQQAMLIYA 180
  181 VAFAIVVCGL SFFLVNPPAG YVPADVPKAD GTAKAAPAKP AVNATASEML RSGKFYILWV 240
  241 TYFIGAGAGL MVIGSVAGIA KKSMGSMAFL AVAIMALGNA GGRVVAGVLS DKIGRMATLL 300
  301 IMFVFQAVLM FAAIPVVGAG HPNAVLVVLL ATFMGFNYGA NLALFPSFSK DYWGLKNYGL 360
  361 NYGILFTAWG VGGFVMGRAS EMLNTQTGSF NASFILAGAL LSVGALVSLA LKPAKAATPA 420
  421 TAAAQPVPRN DFMESFMRGW ADFLGFTPST PRGTR