YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KDPA_GEOSL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.61
Transmembrane Helix	7	28	0.78
Cytoplasmic	29	69	0.78
Transmembrane Helix	70	91	0.93
Non-Cytoplasmic	92	136	0.93
Transmembrane Helix	137	160	0.88
Cytoplasmic	161	176	0.93
Transmembrane Helix	177	199	0.89
Non-Cytoplasmic	200	285	0.96
Transmembrane Helix	286	305	0.93
Cytoplasmic	306	312	0.82
Transmembrane Helix	313	333	0.92
Non-Cytoplasmic	334	358	0.91
Transmembrane Helix	359	379	0.80
Cytoplasmic	380	385	0.69
Transmembrane Helix	386	405	0.78
Non-Cytoplasmic	406	411	0.67
Transmembrane Helix	412	431	0.93
Cytoplasmic	432	446	0.88
Transmembrane Helix	447	470	0.89
Non-Cytoplasmic	471	514	0.66
Transmembrane Helix	515	539	0.82
Cytoplasmic	540	558	0.59
Transmembrane Helix	559	581	0.92
Non-Cytoplasmic	582	592	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVYESLQTV LLFVVLLAMV KPLGTFMARV FQGERTILSP VLAPAESLLY GVCGVNSEEE  60
   61 MDWKRYARAM VLFNLVIFAT LFAMLMLQHL LPLNPQKFPA FSWQLALNTA VSFTTNTNWQ 120
  121 AYAGEQAASY FTQMVGLTVH NFVSAATGIA VAIAVIRGFA RRTTSALGNF WVDLTRATLY 180
  181 ILVPISLIAA LVLVSQGVIQ NFSAYQAVSL VQPVTYDTPK RDGTGSPVKD PTGNPVTERV 240
  241 TAKEVTIPMG PVASQEAIKE LGTNGGGFFN ANSAHPFENP TPLSNMLEIL LILLIPFSLT 300
  301 YTFGAMVGNT RQGWTLLGVM LLILLASFAV LQGVESGGNP LVTKLGVHGA NMEGKDTRFG 360
  361 LAGSSLFTVA TTGTSCGAVN TMHDSLTPIG GMIPMSLMLL GELVPGGVGS GLYTMLAFAV 420
  421 IAVFVSGLMI GRTPEYLGKK IEVREMWMSV VTVLAAGVMV LILSGIAMIS PSAVAAMANP 480
  481 GAHGLSEVLY AFASMANNNG SAFAGLSANT TFYNILGALA MIVGRFAPAV AVLAMAGSLA 540
  541 EKKYVPPSLG TLPTDKVPFA LWLTLVILIV GALTFFPALS LGPIVEHLTM TM