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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|39997412, gi|...
Protein type: Transmembrane
Type Confidence: 0.77
Topology Confidence: 0.66
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHEAAKVDAR AQFEKDIVYR RWNAGHGGVY VPVTERAQPN PWLAGLKDRD VETTTGKRLT  60
   61 LINPAYMTRQ VHELNFESSG IRGHITSLRP IRQANAPDNW ETRALESFER GQQEYSSVEL 120
  121 MDGVPHLRLM RPLMVEQSCL RCHPGPSYSV GDVRGGISVS VPLAPYSALA RNKMAATGAG 180
  181 HLTFWAAGLG GIILAARRIT RDDRSLLLQQ ARLAESEERN RLLSEVALEG IVIHDRGIVQ 240
  241 DMNARFAKLF GYPREELEGI NVISLLFHPD DIGSMIDKMS RAHSEPYQVR GVKKDGTVFD 300
  301 VEIEGYNLQH GDKSVRVVSV RDITERRRAE EALRQSEALF RNLFEHHAAV KLIIDPVSGA 360
  361 IVDANNAAVS FYGWSREQLR AMNIRDINML SPEELVSELE NTKNMERIHF FFRHRRADDS 420
  421 VRDVEVFSSR IEVKGREYLH SIVHDVTERK RAEEELLLAK EQAESANRAK SEFLANMSHE 480
  481 IRTPMNGVIG MTGLLLETGL ADEQRRYAEI VRTSAASLLQ VIDDILDFSK IEAGRLEMET 540
  541 IGFDLRTLLD DLAESLAFKA NEKGLTFTCL LRPEVPRFLM GDPVRLKQVL VNLAGNALKF 600
  601 THQGEISVEV GSLTKTGDSV KLRFAVRDTG IGIPPEKTEL LFEKFTQADA SITRKYGGTG 660
  661 LGLAICKRLV QMMGGEIGVT SRPGVGSEFW FTASFGTQNL RDSSPEPDGG DGPLQLLSDL 720
  721 GHDDVRILLV EDNATNRQVA LGIIKRLGLR GDAAANGAEA LDLLATTPYD LVLMDVQMPV 780
  781 MDGFEATRHI RDVRSPVLNH EIPVIALTAH AMKGDRRKCL DAGMNDYLAK PIFPDALAEM 840
  841 LVKWLPRRCR ISNDGDGERA NAVPAVPDGT PVFDRPGLEA RLMGDESLVT EVVAAFLADM 900
  901 PDLIERLRAA VADGEPATVA HWAHTIKGGA ASVGGERLRA AAAALEYAAV AGGMGGVACC 960
  961 MNMLEIEFGR LCEIMRQDYV KE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle