YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NHAA_GEOSL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.80
Transmembrane Helix	11	28	0.94
Non-Cytoplasmic	29	46	0.84
Transmembrane Helix	47	68	0.85
Cytoplasmic	69	85	0.83
Transmembrane Helix	86	108	0.90
Non-Cytoplasmic	109	115	0.84
Transmembrane Helix	116	136	0.87
Cytoplasmic	137	143	0.77
Transmembrane Helix	144	165	0.93
Non-Cytoplasmic	166	173	0.77
Transmembrane Helix	174	190	0.97
Cytoplasmic	191	197	0.73
Transmembrane Helix	198	219	0.69
Non-Cytoplasmic	220	271	0.54
Transmembrane Helix	272	306	0.73
Cytoplasmic	307	323	0.76
Transmembrane Helix	324	347	0.90
Non-Cytoplasmic	348	354	0.80
Transmembrane Helix	355	376	0.90
Cytoplasmic	377	382	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKRINLLRE FSVPLIAGVV VALLWANLDP AGYHSFIEQP FFGGMSFHFV VNELFMVLFF  60
   61 GIAAVEITQS CLPGGDLNPL RKAVNPLLAT LGGVVGPVLV YLGLNAIIGG PELTRGWGIP 120
  121 TATDIALAWL VARLVFGAGH PAVSFLLLLA VADDAIGLAI IAVFYPDPNH PTEPIWLFLT 180
  181 VAGMVVAYIL RSLKSRSYWP YVVVGGGLAW TGLFKAHLHP ALALVFIIPF LPHPSRETAH 240
  241 LFEADPRDTS TLARFEHDWK IVVDFGLFMF GLANAGVGFS SVGAATWLVL ASLVIGKTLG 300
  301 IFAMGYVGRA LGFPLPQQVG AKELAMTGLV AGIGLTVALF VAGVAFVEPD IQGSAKMGAL 360
  361 LSGGVSIVAI MLGRALNVRR IP