YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39984272, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSSPSSRTA DLSSSGQWKD GSPQEERAPG APLKPSRFID SANCAIEGIL WASRTQPHMR  60
   61 YHFLAALGLL VAVLFLRVTP LEFTLLAVSV AFVLFAELMN TAVEAVVDLV SPGYHPLAKI 120
  121 AKDVAAGGVL TAAIGAAVMG YLILSKYIFP IYKEALAMIG TPTEMGTVVA LLVVVIVVVI 180
  181 LKSLSGRGTP LEGGLPSGHA AVAFGIATVV SLSTQDPLIS ILTIALAVMV SHSRLLLNIH 240
  241 TMREVVLGAI TGTAISALVL TLFRILK

Type	Start	End	Confidence
Cytoplasmic	1	58	0.92
Transmembrane Helix	59	79	0.89
Non-Cytoplasmic	80	84	0.68
Transmembrane Helix	85	107	0.76
Cytoplasmic	108	123	0.69
Transmembrane Helix	124	144	0.94
Non-Cytoplasmic	145	162	0.66
Transmembrane Helix	163	184	0.87
Cytoplasmic	185	192	0.67
Transmembrane Helix	193	212	0.81
Non-Cytoplasmic	213	217	0.57
Transmembrane Helix	218	237	0.80
Cytoplasmic	238	244	0.63
Transmembrane Helix	245	266	0.92
Non-Cytoplasmic	267	267	0.69