YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39984031, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLPIVFYLF SFVLGAVVGS FLNVCIYRLP TGESVVFPPS RCTSCGTRIR PWDNIPILSW  60
   61 LILRGACRAC RAKISARYPL VELINGLLCL ALFLKFGPTL TFAALFVFCS ALVAISFIDL 120
  121 DHQIIPDVIS LPGIVLGFVL SFFLPWLGWL NSLIGIAAGG GSLLLVAWLY ERLTGKEGMG 180
  181 GGDIKLLAMM GAFLGWRAVP FIIFASSLVG SVIGLTLMML QKKDSKLAIP FGPFLALGAL 240
  241 LYIFFGKAII LWYLSIGAR

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.66
Transmembrane Helix	6	27	0.91
Cytoplasmic	28	73	0.71
Transmembrane Helix	74	94	0.56
Non-Cytoplasmic	95	99	0.52
Transmembrane Helix	100	118	0.92
Cytoplasmic	119	127	0.56
Transmembrane Helix	128	147	0.89
Non-Cytoplasmic	148	152	0.53
Transmembrane Helix	153	172	0.87
Cytoplasmic	173	192	0.63
Transmembrane Helix	193	218	0.84
Non-Cytoplasmic	219	230	0.57
Transmembrane Helix	231	254	0.85
Cytoplasmic	255	259	0.56