YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39997105, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQINALITN TRGASPVSII LGVVILAGLF LFPKAVESPY ALHIMILFFL STIMGESWNI  60
   61 VGGYTGQYSV GHAAYFGAGA YTTMVLMQFK QIPPWYGMIA GIAVALVVSL IIGSICFRLR 120
  121 GPYFVLASIA VAEIMRLCAM NLKDLTNGAE GILATDIPPF TLGGTVITDF LSKVPFYYIG 180
  181 LVIAILTIAV TYLVQHSKLG YYFQAIREDQ DAAHSLGINL SIYKNIALAI SAVFTSLAGS 240
  241 FYAIYIGFID PPTVLALDIS VQIVLICIIG GIGTIWGPVV GSLVLVPLSE ALRSNLIAQG 300
  301 IFKIGLASEE SGVGIFLKDH LAHAHALIYG ILVVVVILFM PDGVLGYVKK LTKKKAM

Type	Start	End	Confidence
Cytoplasmic	1	12	0.76
Transmembrane Helix	13	32	0.95
Non-Cytoplasmic	33	39	0.71
Transmembrane Helix	40	61	0.90
Cytoplasmic	62	67	0.72
Transmembrane Helix	68	89	0.81
Non-Cytoplasmic	90	94	0.73
Transmembrane Helix	95	117	0.90
Cytoplasmic	118	173	0.69
Transmembrane Helix	174	195	0.91
Non-Cytoplasmic	196	225	0.79
Transmembrane Helix	226	248	0.92
Cytoplasmic	249	258	0.63
Transmembrane Helix	259	280	0.87
Non-Cytoplasmic	281	324	0.80
Transmembrane Helix	325	348	0.88
Cytoplasmic	349	357	0.97