YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39997104, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIFLQSLIS GILIGGVYAL IGIGLTIIFG VMRVINFAHG DIMMIGMYLT YNFFSLAGVD  60
   61 PFVSIALTIP LMFLFGAILQ KTFINRVLGA LPQNQILLTI GLGLIMSNTM MFIYTSDYKI 120
  121 LTTSYSSSSF NIGTISISWP LAISFLITAA ITLLLYWFLM KTDTGQAIRA TAQDREAAQL 180
  181 MGINVKRMSI LAFGMGAALA GTAGALISPT YYIFPQIGST FTLKAFVITV LGGMGSIVGA 240
  241 TIGGVIIGVA ESLGAVYISS GWKDVVVFVL FLLVLLFKPA GLLGKSKM

Type	Start	End	Confidence
Cytoplasmic	1	7	0.77
Transmembrane Helix	8	32	0.86
Non-Cytoplasmic	33	52	0.67
Transmembrane Helix	53	79	0.80
Cytoplasmic	80	95	0.75
Transmembrane Helix	96	115	0.94
Non-Cytoplasmic	116	136	0.85
Transmembrane Helix	137	159	0.94
Cytoplasmic	160	189	0.88
Transmembrane Helix	190	213	0.88
Non-Cytoplasmic	214	224	0.81
Transmembrane Helix	225	250	0.86
Cytoplasmic	251	260	0.71
Transmembrane Helix	261	282	0.86
Non-Cytoplasmic	283	288	0.77