YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39997014, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALPDRRAEG VAASLAGALI PAFLAAQDRI IEMVPFRTSA TLFAFVLTIV FLAFALRVLF  60
   61 SFRDVRSAAV ETALFATGFL YVPLLLTHLA WLRALPDGVG WIFLVLVIVM SGDTAAYYVG 120
  121 SNLGRRKLYP SVSPNKSVEG AIGGLLGSLA GTFVARLTFF PGLTVLDCIA TALLLGVLGQ 180
  181 VGDLFESLLK RSFGVKDSGT IVPGHGGILD RLDSILFAVP AAYYYALFVF MNR

Type	Start	End	Confidence
Cytoplasmic	1	9	0.85
Transmembrane Helix	10	27	0.89
Non-Cytoplasmic	28	38	0.75
Transmembrane Helix	39	60	0.93
Cytoplasmic	61	71	0.79
Transmembrane Helix	72	92	0.93
Non-Cytoplasmic	93	98	0.89
Transmembrane Helix	99	120	0.94
Cytoplasmic	121	139	0.89
Transmembrane Helix	140	160	0.74
Non-Cytoplasmic	161	162	0.61
Transmembrane Helix	163	185	0.69
Cytoplasmic	186	208	0.55
Transmembrane Helix	209	231	0.60
Non-Cytoplasmic	232	233	0.39