YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PSD_GEOSL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNENTPIAV EGYPFIAIAG VLTLILAAVS WHAPVVWAGT AFFLTVTLFV AFFFRNPERI  60
   61 TPGNENAVVA PADGVVIYLG PAREEHLGVE TTKISIFMSV FNVHINRAPV SGTVLDTFYV 120
  121 KGKFLDVRDD RATFENEQAG LVIETARGLR LAVVQVAGLI ARRIVCYAGK GDRLTRGGRY 180
  181 GLIRFGSRLD IYLPTTTEVK VALGEKTVAG ETVLGILP

Type	Start	End	Confidence
Cytoplasmic	1	8	0.91
Transmembrane Helix	9	29	0.91
Non-Cytoplasmic	30	34	0.72
Transmembrane Helix	35	54	0.93
Cytoplasmic	55	218	0.94