YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39997005, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKGIYILPN LFTTGSLFAG FYGMVATMNG DFKTAALWVL ISSIFDGLDG KVARLTGTSS  60
   61 KFGVEYDSLA DVVAFGVAPG LLMYKWALQP FGRLGWLAAF LFVVCGALRL ARFNVQVNTV 120
  121 ENKRFVGLPI PAAASMVSAT VLLFYHFGWP SSYKKVAILA LIYLLAFLMV SSFRYYSFKD 180
  181 PELIKRQPFA MLVLAVLLLI VIAAEPVVML FVIFFCYTFS GIIGFFMSLP RRRRLEKALH 240
  241 HRHAKDDH

Type	Start	End	Confidence
Cytoplasmic	1	6	0.89
Transmembrane Helix	7	26	0.93
Non-Cytoplasmic	27	33	0.76
Transmembrane Helix	34	53	0.66
Cytoplasmic	54	67	0.58
Transmembrane Helix	68	87	0.67
Non-Cytoplasmic	88	93	0.73
Transmembrane Helix	94	113	0.93
Cytoplasmic	114	124	0.94
Transmembrane Helix	125	148	0.92
Non-Cytoplasmic	149	155	0.89
Transmembrane Helix	156	176	0.95
Cytoplasmic	177	186	0.78
Transmembrane Helix	187	204	0.93
Non-Cytoplasmic	205	209	0.72
Transmembrane Helix	210	229	0.95
Cytoplasmic	230	248	0.94