YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39996954, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANLQNECCN ANDSSNNFEA ERICILEYLE VVLCGWKLIT ILTVLAFVLS LVISISLPNV  60
   61 YKATTRILPP QQDSGLLGLM LGQAGSFGGV GPLATDLLGK ANPADMYVSI MTSEAISDKI 120
  121 IDKFNLMKVY NEKYRIDAYK VLDNNIDILA GKKDGIITIS VEDEDPQRAA NIANAYVNEL 180
  181 SNLLVQLNSK ESAQNRVFYE ERLAKAKVDL ARSEDNLKQF QTKYKVVSVA DQAQAAISNI 240
  241 AQLNAQLIAQ EIQLSNLRKQ FTEDSLEVKN VKSTINGLRN QISRIESREA GGAIPNMGLI 300
  301 PELGQQYFRL MREFKVQEAI VDLLTKQFES AKLGELKDSY YVQIIQTARV PDKKSKPKRS 360
  361 MIVAMSTVIT FGFGILSVII MHMLSKLPSN ELVVWNRIKS RVVKRI

Type	Start	End	Confidence
Cytoplasmic	1	34	0.78
Transmembrane Helix	35	57	0.86
Non-Cytoplasmic	58	75	0.71
Transmembrane Helix	76	97	0.70
Cytoplasmic	98	361	0.96
Transmembrane Helix	362	384	0.93
Non-Cytoplasmic	385	406	0.95