YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39996924, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPESASTIW NVPNILTLVR IALIPVMAVL LLSPSKEAGF WAAAVFAIAS VTDWLDGYLA  60
   61 RKMEIVTVFG KFLDPIADKL MVMAALIMVL PFNRIPAWMV LVILGREIII TGLRGIASTE 120
  121 GIVIPASDLG KFKTIFQIVA ILGILLHFDY HWFFGIDHPY LYVNMHNVGM FYLWIATIIT 180
  181 IWSGVDYLVK FTKVIAR

Type	Start	End	Confidence
Cytoplasmic	1	9	0.84
Transmembrane Helix	10	32	0.86
Non-Cytoplasmic	33	37	0.76
Transmembrane Helix	38	59	0.83
Cytoplasmic	60	75	0.63
Transmembrane Helix	76	92	0.77
Non-Cytoplasmic	93	94	0.48
Transmembrane Helix	95	117	0.73
Cytoplasmic	118	133	0.71
Transmembrane Helix	134	153	0.90
Non-Cytoplasmic	154	169	0.88
Transmembrane Helix	170	189	0.94
Cytoplasmic	190	197	0.87