YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39996883, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALYHCKLGS SEGRIITREL EAANPEMLRT SLEEQGFFVF EIKKKPLQFL WDKGGGRRKV  60
   61 DNKALLTLNQ ELLVLIKAGL PIIQALDTVL ERVERGTLFD VLAVVREDVK GGMALSDALE 120
  121 KHTKVFPHLY VASVRAGERT GDLQLTIRRY IAFLKRVEEV RKRFISALVY PAILVTVATL 180
  181 AITFLLVYVV PTFSQVYADA GSQLPLPTRI LIAFSTSLKQ LFPLIIAAVI GAVFFFRRWA 240
  241 ATESGRYRVD DIKIRIPFIG DVFSKFAVSS FTRTLATVIG SGIPIVESLK MSVGTLNNRV 300
  301 LERRMLEAVV KIEEGMSLSG AIESARIMPP LALRMLGVGE STGSLEEMLS DIAEYFEGEI 360
  361 DARLHLLTTA IEPAIMIVMG LVVGVIIVTM YLPVFKIAGT VG

Type	Start	End	Confidence
Cytoplasmic	1	165	0.99
Transmembrane Helix	166	188	0.91
Non-Cytoplasmic	189	219	0.87
Transmembrane Helix	220	239	0.91
Cytoplasmic	240	372	0.78
Transmembrane Helix	373	395	0.89
Non-Cytoplasmic	396	402	0.68