YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39983729, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQYLSILEAL GGLGVFILGM KTMSEGLQKI AGDRFRRHLE RIAGNRLTAA LLGSTLSSLL  60
   61 QSSSAACIIT VGFINAGLIS LYQALGILLG TGIGTTLAVQ FIAFKISSFA LPAVFVGVCL 120
  121 RCFLRRRRWV NAGELILGAG LLFLGLRIME SNLQPLQEYA IVFTHQDMFV SKRIAAVLFG 180
  181 ATLTLLVQSG STAIAVIMAL AGSSLVSFET GAAMVIGELL GTSVITAFAS IGGTLEAKRT 240
  241 VFFYFMVNLL AVVVVMLVFP SYLSFVTYIS PEDIASSAGI SRVLANTHTL FSIMSAVIFL 300
  301 PLIGFFARTA PRIIPGSERA SSVEARTVFI DPRVLNTPPI ALLQARSELR RMAGISLTMY 360
  361 SEMVEQFFRY DARKAVGIRQ KENAVDILQR DLTDFLVSLS RRELAPEASM EIPVMLQLIG 420
  421 ELEHVADQSE AVLDYLRRKK EEKLLFSNAA MTEIRHLART VEKLVDLAVE TMDNPPPDAV 480
  481 EQGRSLRDDV GRQREAMLDG HIKRLSAGKC SVRAGIIYAD MITAFVKIAD SSVTIIETRK 540
  541 EFT

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.53
Transmembrane Helix	6	24	0.55
Cytoplasmic	25	50	0.82
Transmembrane Helix	51	85	0.66
Non-Cytoplasmic	86	100	0.54
Transmembrane Helix	101	124	0.79
Cytoplasmic	125	174	0.65
Transmembrane Helix	175	201	0.83
Non-Cytoplasmic	202	210	0.61
Transmembrane Helix	211	233	0.87
Cytoplasmic	234	240	0.69
Transmembrane Helix	241	263	0.90
Non-Cytoplasmic	264	286	0.70
Transmembrane Helix	287	307	0.92
Cytoplasmic	308	543	0.77