YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39996832, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLGQQIAQY LLSGLSTGAI YSLIGVGFAI IHNATGIINF AQGELVMLGG MFTLFFLTAL  60
   61 NLPLLVAIIL AIGATTLVGV VFERLAIRPM KNASPISLVI ITIGGSILIR GIAMIVWGKD 120
  121 THAIPTFSGN EPIHLGEATI LPQHLWIFAV TIVVMICSKL YFNYTISGKA MRACAYNRRA 180
  181 AGLVGIDVRR MVLFSFAISS AMGSLAGIII APLTMTSYDV GIMLGLKGFC AAIIGGMSSG 240
  241 LGTILGGILL GILESLGAGL FSSGYKDAIA FIILLLILFV RPQGLFRKGE TERV

Type	Start	End	Confidence
Cytoplasmic	1	9	0.75
Transmembrane Helix	10	32	0.86
Non-Cytoplasmic	33	53	0.64
Transmembrane Helix	54	82	0.83
Cytoplasmic	83	95	0.82
Transmembrane Helix	96	117	0.92
Non-Cytoplasmic	118	143	0.92
Transmembrane Helix	144	163	0.94
Cytoplasmic	164	191	0.89
Transmembrane Helix	192	213	0.91
Non-Cytoplasmic	214	228	0.73
Transmembrane Helix	229	253	0.87
Cytoplasmic	254	262	0.69
Transmembrane Helix	263	285	0.77
Non-Cytoplasmic	286	294	0.77