YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39983719, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.95
Transmembrane Helix	9	29	0.89
Non-Cytoplasmic	30	35	0.69
Transmembrane Helix	36	55	0.91
Cytoplasmic	56	61	0.71
Transmembrane Helix	62	81	0.89
Non-Cytoplasmic	82	86	0.82
Transmembrane Helix	87	108	0.92
Cytoplasmic	109	114	0.78
Transmembrane Helix	115	135	0.89
Non-Cytoplasmic	136	163	0.92
Transmembrane Helix	164	184	0.93
Cytoplasmic	185	208	0.94
Transmembrane Helix	209	232	0.87
Non-Cytoplasmic	233	249	0.87
Transmembrane Helix	250	274	0.88
Cytoplasmic	275	285	0.87
Transmembrane Helix	286	305	0.95
Non-Cytoplasmic	306	326	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVLSLVKLQ SVRFICFSLL ILALPTFIAE GYLLNVFVFV GIHTMLAVAL NLLLGYAGQI  60
   61 SLGQAAFFGL GAYASGILTA THEWNPWLAM VVVAAAVGTL AFAIGFPILK LKGHYLAMAT 120
  121 LGFGIIVYIL FNEAVELTGG PSGFPGIPNL AVGSVTFDSD LKNYYLIWGI ALVTILLSVN 180
  181 LVNSRIGRGL RAIHDSEVAA RVMGVNVRLL KVQVFALSAV ISSVAGSLYA HTMTFVSPTS 240
  241 FGFNFSVELV TMVIIGGLGS IYGSFLGATL LTLLPELLRA FQDYDIVVYG LLLIFMTMFM 300
  301 PGGLVRGIPD LFQRFRSREG RGAADA