YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39996788, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSFHENMMR RALSLARKGI GKTSPNPVVG CVIVREGVVV GEGWHRKAGT PHAEVHALRE  60
   61 AGPLARGADV YVTLEPCSHF GRTPPCADAL VAAGVARVFV GMVDPNPTVC GKGITRLEAV 120
  121 GIQVITGVLG KECRLINEPF VKHVSTGLPF LTLKSALTLD GKTATALGDS RWITNDKSRR 180
  181 YVHQLRAEVD AVMVGVGTLL ADNPELTVRH VKGKNPLRII VDSSLKIPNE SRVLGDDLAR 240
  241 GTIIATTSDD QERIGFLETR GAQVIRCASD KGRVDLRDLM QRLGAKGIQS ILLEGGSELA 300
  301 GAALRQGLID KFILFYAPIV LGGAAGIGLF GGKSVERMGR AFRLETARVR RFGGDVMIEA 360
  361 YPEEACSLD

Type	Start	End	Confidence
Non-Cytoplasmic	1	311	0.77
Transmembrane Helix	312	333	0.88
Cytoplasmic	334	369	0.84