YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39996757, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.77
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	16	0.39
Transmembrane Helix	17	39	0.67
Non-Cytoplasmic	40	223	0.52
Transmembrane Helix	224	248	0.79
Cytoplasmic	249	257	0.44
Transmembrane Helix	258	278	0.48
Non-Cytoplasmic	279	279	0.35
Transmembrane Helix	280	301	0.77
Cytoplasmic	302	307	0.71
Transmembrane Helix	308	327	0.77
Non-Cytoplasmic	328	332	0.58
Transmembrane Helix	333	354	0.82
Cytoplasmic	355	362	0.59
Transmembrane Helix	363	384	0.89
Non-Cytoplasmic	385	389	0.52
Transmembrane Helix	390	412	0.79
Cytoplasmic	413	416	0.40
Transmembrane Helix	417	438	0.87
Non-Cytoplasmic	439	456	0.56
Transmembrane Helix	457	475	0.80
Cytoplasmic	476	481	0.68
Transmembrane Helix	482	503	0.85
Non-Cytoplasmic	504	771	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFPPWLAWLC LAGSTALIFF RSAVPLIVAV GLTFFVWGAS SLAPFLYPDL SSTHVARYTG  60
   61 YGPVIIEGIV DSRPDVRPSE GKFCLAAESV IAAGSTLPAS GRLIVYVKAG MVPFLTGDRV 120
  121 RFRAKVAEPS NYGIPGEYDY RRSLAYRDIH ATAFVRHADD ILLMRQAVAF PVQRFFDRSA 180
  181 AKLGDVIGRY SPNEGGVLRA LLLGERGFVS KKLEEAYARA GVNHILSISG FHVGIIALVI 240
  241 YRALLLLLSR FERLALQFNL RRTALLATLP PVTFYLFLSG AAPATVRSVL MIAVITLALW 300
  301 LERETDPINV LTMAALAMLA ANPPSLFDIS FQLSFLALWG LVVLTPVFTH PLCTLDNGVV 360
  361 KNVILLLAAS TAATLVTFLP VGHAFHRATV AGIISNVFIV PLMGYGAVVA GFAALPLIAV 420
  421 APVAAGPLIT IASWLVALSN RIIEWLARIP PVPLHSVTRS DLLVSFLVLL GLTLLPGRRA 480
  481 RILVAGIGAL ALSALHLPAM AGGDAKLVIT FLSVGQGEST LVSLPDGKIM LVDGGGAVHG 540
  541 GGTDVGERLL VPALWSMGVE SIDYLVLTHP HPDHLEGLLY LATAMPVGEF WETGQSTENT 600
  601 SLAELRARLV AQGVPIKHLS AATAPFTVGG ARVEPLWPCD KSPGKGADND DSLVFRLALG 660
  661 GTSILFTGDI GAPAEDVLAN DPARLRCTVL KVPHHGSRYS SSPCFLDAAS PQVALISAGR 720
  721 RNNFGLPAPE TLTRLVARGI DVYRTDRDGT VQVTFTGETW AVGTFAKGHF R