YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39996741, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.65
Transmembrane Helix	12	35	0.83
Cytoplasmic	36	51	0.61
Transmembrane Helix	52	71	0.62
Non-Cytoplasmic	72	78	0.62
Transmembrane Helix	79	100	0.90
Cytoplasmic	101	116	0.95
Transmembrane Helix	117	140	0.88
Non-Cytoplasmic	141	158	0.86
Transmembrane Helix	159	178	0.95
Cytoplasmic	179	197	0.84
Transmembrane Helix	198	216	0.94
Non-Cytoplasmic	217	222	0.91
Transmembrane Helix	223	246	0.87
Cytoplasmic	247	252	0.84
Transmembrane Helix	253	275	0.91
Non-Cytoplasmic	276	298	0.91
Transmembrane Helix	299	322	0.88
Cytoplasmic	323	342	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELQITWFVL WGVLWAVYFM LDGFVLGTGI LHNVIAKTDG EKRVLINAVG PVWDGNEVWL  60
   61 LTAGGATFAA FPTTYALMFS YLYTALLLLL FSLIVRGVAF EFRGKVESAT WKKTWDVAIQ 120
  121 VSSFLPALLF GVAFGNIFAG LPMDANGYHG SLIGLLNPYG LLTGVLFVLL FTVHGALYLS 180
  181 VKSVGELSAR AKGVADKVWP VLLVVAVAFL AYTKFATKLY DNYLAQPVLF IVPLLAVAGL 240
  241 VGTRLFSAKG ATLAAFAASC VTVLMVAATG VAGLFPNLIP SSLDPAYSLT IFNSSSSPYT 300
  301 LKIMTAVALI FVPIVIAYKI WVYRIFRAPV TEAEVLNDTH AY